Variant report

Variant	rs394342
Chromosome Location	chr9:93855575-93855576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs296611	0.82[EUR][1000 genomes]
rs296619	1.00[CEU][hapmap]
rs296648	0.80[EUR][1000 genomes]
rs364630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365426	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs369473	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs377013	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs378000	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs379712	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs386591	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs388254	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs392664	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs416826	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs417727	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418408	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs421610	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs426054	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs435017	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs439584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443917	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs447149	0.80[EUR][1000 genomes]
rs447365	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs454860	0.88[EUR][1000 genomes]
rs582337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs773278	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs773279	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052912	chr9:93846078-93866362	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93847800-93855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93852600-93859800	Weak transcription	Fetal Heart	heart
3	chr9:93852600-93861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:93852800-93861200	Weak transcription	NHLF	lung
5	chr9:93853200-93857800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:93854200-93860600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:93855400-93855800	ZNF genes & repeats	Fetal Intestine Small	intestine

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