Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr1:84866742-84867292	SK-N-SH	brain:	n/a	n/a
2	GATA2	chr1:84866701-84867212	SH-SY5Y	brain:	n/a	n/a
3	REST	chr1:84866719-84867086	PFSK-1	brain:	n/a	n/a

Variant related genes	Relation type
UOX	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12029581	0.90[JPT][hapmap]
rs12034438	0.85[JPT][hapmap]
rs12046192	0.90[ASN][1000 genomes]
rs1246386	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1246392	0.90[JPT][hapmap]
rs1506700	0.90[JPT][hapmap]
rs17131659	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1981254	0.90[JPT][hapmap]
rs3116415	0.90[JPT][hapmap]
rs3117747	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3121147	0.90[JPT][hapmap]
rs3813608	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs472601	0.90[JPT][hapmap]
rs507772	0.90[JPT][hapmap]
rs553775	0.86[JPT][hapmap]
rs601564	0.90[JPT][hapmap]
rs6576700	0.90[JPT][hapmap]
rs6663802	0.90[JPT][hapmap]
rs679725	0.90[JPT][hapmap]
rs72714743	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84863000-84871200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:84864400-84867400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:84866600-84868000	Enhancers	HUVEC	blood vessel

Quick Search: