Variant report

Variant	rs395874
Chromosome Location	chr5:154433397-154433398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs188256	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286628	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286632	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs287119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs287122	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs287125	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs287126	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154432000-154434200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr5:154432000-154435000	Enhancers	HepG2	liver
3	chr5:154432200-154433400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr5:154432200-154433600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:154432200-154434000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:154432200-154434200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:154432200-154435600	Enhancers	Fetal Heart	heart
8	chr5:154432400-154433600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:154432400-154434200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:154432400-154437200	Weak transcription	Left Ventricle	heart
11	chr5:154432600-154433400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr5:154432600-154433400	Enhancers	Right Atrium	heart
13	chr5:154432600-154434200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:154432800-154433400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr5:154432800-154433400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:154432800-154433800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:154433000-154433600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:154433000-154434000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:154433200-154433400	Enhancers	Colon Smooth Muscle	Colon
20	chr5:154433200-154433400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr5:154433200-154433400	Enhancers	Right Ventricle	heart
22	chr5:154433200-154434600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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