Variant report

Variant	rs3959246
Chromosome Location	chr19:51685067-51685068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10404545	0.87[AFR][1000 genomes]
rs1878045	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1878046	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28629968	0.87[AFR][1000 genomes]
rs28662217	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57285255	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7252160	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7252364	0.87[AFR][1000 genomes]
rs7252722	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7252750	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7254514	0.93[AFR][1000 genomes]
rs73610293	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51684600-51685200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:51684600-51685800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:51684800-51685400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr19:51684800-51685600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr19:51684800-51687000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr19:51685000-51685400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:51685000-51685400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr19:51685000-51685400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
9	chr19:51685000-51685600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chr19:51685000-51685600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr19:51685000-51688600	Enhancers	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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