Variant report

Variant rs396169
Chromosome Location chr5:61028529-61028530
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:61023200-61028800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr5:61026000-61029200 Enhancers Fetal Brain Male brain
3 chr5:61026800-61029400 Enhancers Fetal Stomach stomach
4 chr5:61027000-61029200 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
5 chr5:61027400-61032400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr5:61027600-61028600 Flanking Bivalent TSS/Enh HUES6 Cell Line embryonic stem cell
7 chr5:61027600-61028800 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr5:61027600-61029000 Enhancers Pancreas Pancrea
9 chr5:61027600-61029200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr5:61027600-61030600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
11 chr5:61027800-61028600 Bivalent Enhancer hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr5:61027800-61028800 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
13 chr5:61027800-61028800 Active TSS Brain Inferior Temporal Lobe brain
14 chr5:61027800-61028800 Active TSS Duodenum Smooth Muscle Duodenum
15 chr5:61027800-61029000 Enhancers H1 Cell Line embryonic stem cell
16 chr5:61027800-61032400 Weak transcription H9 Cell Line embryonic stem cell
17 chr5:61028000-61028600 Flanking Bivalent TSS/Enh iPS-18 Cell Line embryonic stem cell
18 chr5:61028000-61028600 Bivalent/Poised TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr5:61028000-61028600 Active TSS Brain Anterior Caudate brain
20 chr5:61028000-61028600 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
21 chr5:61028000-61028800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
22 chr5:61028000-61028800 Flanking Active TSS Brain Germinal Matrix brain
23 chr5:61028000-61028800 Flanking Active TSS Fetal Brain Female brain
24 chr5:61028000-61029200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
25 chr5:61028200-61028600 Flanking Active TSS Cortex derived primary cultured neurospheres brain
26 chr5:61028200-61028600 Flanking Active TSS Colon Smooth Muscle Colon
27 chr5:61028200-61028600 Flanking Active TSS Ovary ovary
28 chr5:61028200-61028600 Active TSS Rectal Smooth Muscle rectum
29 chr5:61028200-61028800 Bivalent/Poised TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr5:61028200-61028800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
31 chr5:61028200-61028800 Active TSS Brain Hippocampus Middle brain
32 chr5:61028200-61028800 Active TSS Brain Substantia Nigra brain
33 chr5:61028200-61028800 Active TSS Stomach Smooth Muscle stomach
34 chr5:61028200-61029000 Bivalent/Poised TSS ES-WA7 Cell Line embryonic stem cell
35 chr5:61028200-61029000 Enhancers Fetal Muscle Trunk muscle
36 chr5:61028200-61029000 Enhancers Gastric stomach
37 chr5:61028200-61029000 Bivalent/Poised TSS NH-A brain
38 chr5:61028200-61029800 Weak transcription Fetal Kidney kidney
39 chr5:61028400-61028600 Flanking Active TSS HUES64 Cell Line embryonic stem cell
40 chr5:61028400-61028600 Flanking Bivalent TSS/Enh iPS-20b Cell Line embryonic stem cell
41 chr5:61028400-61028600 Flanking Active TSS Liver Liver
42 chr5:61028400-61028600 Flanking Active TSS Brain Angular Gyrus brain
43 chr5:61028400-61028800 Active TSS Brain Cingulate Gyrus brain
44 chr5:61028400-61029000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
45 chr5:61028400-61029200 Bivalent Enhancer HUES48 Cell Line embryonic stem cell
46 chr5:61028400-61029200 Enhancers Fetal Lung lung

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