Variant report
Variant | rs397139 |
---|---|
Chromosome Location | chr6:133221923-133221924 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs1408065 | 0.93[CEU][hapmap] |
rs271110 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs271111 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs271112 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs271179 | 0.93[CEU][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs2764216 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs374766 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs379362 | 0.81[ASN][1000 genomes] |
rs412154 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs413864 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs528694 | 0.99[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs9375927 | 0.80[CHD][hapmap];0.88[MEX][hapmap];0.81[AMR][1000 genomes] |
rs9402465 | 0.81[AMR][1000 genomes] |
rs9493458 | 0.81[YRI][hapmap] |
rs9493459 | 0.83[MEX][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532069 | chr6:132776411-133462292 | Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
2 | nsv1015742 | chr6:132933666-133285852 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 71 gene(s) | inside rSNPs | diseases |
3 | nsv869855 | chr6:133190265-133244259 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:133221800-133222400 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |