Variant report

Variant	rs3974980
Chromosome Location	chr4:97963716-97963717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10005163	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10010641	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10014101	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1018950	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1018951	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17026349	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17026376	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17026379	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28392183	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28520218	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28523751	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28656993	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2865774	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28804793	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28835944	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35894947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3960895	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4145376	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4292338	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4434261	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4615177	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4624660	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57197806	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828546	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72874647	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72874648	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72874649	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72874654	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72878989	0.83[EUR][1000 genomes]
rs72882340	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72882341	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72882343	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7656650	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7656873	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7672661	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7672690	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7681234	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9995442	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1005103	chr4:97914293-98011695	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97959400-97963800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:97959400-97965600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:97959800-97964000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:97960000-97966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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