Variant report

Variant rs397654
Chromosome Location chr6:5087078-5087079
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5084200-5087400 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
2 chr6:5084400-5087200 Active TSS Rectal Smooth Muscle rectum
3 chr6:5085800-5087400 Weak transcription HepG2 liver
4 chr6:5086200-5087600 Bivalent Enhancer Fetal Thymus thymus
5 chr6:5086400-5087200 Enhancers Cortex derived primary cultured neurospheres brain
6 chr6:5086400-5087200 Flanking Bivalent TSS/Enh Fetal Intestine Small intestine
7 chr6:5086400-5087400 Bivalent Enhancer Stomach Mucosa stomach
8 chr6:5086400-5087800 Bivalent Enhancer Primary Natural Killer cells fromperipheralblood blood
9 chr6:5086600-5087200 Bivalent Enhancer H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr6:5086600-5087400 Flanking Active TSS Colon Smooth Muscle Colon
11 chr6:5086600-5087400 Bivalent Enhancer Placenta Placenta
12 chr6:5086600-5088000 Bivalent Enhancer Primary B cells from peripheral blood blood
13 chr6:5086600-5088000 Bivalent Enhancer Primary hematopoietic stem cells blood
14 chr6:5086600-5088200 Enhancers Spleen Spleen
15 chr6:5086800-5087200 Bivalent Enhancer Primary B cells from cord blood blood
16 chr6:5086800-5087200 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin02 Skin
17 chr6:5086800-5087200 Bivalent Enhancer Duodenum Smooth Muscle Duodenum
18 chr6:5086800-5087200 Bivalent Enhancer Fetal Stomach stomach
19 chr6:5086800-5087400 Bivalent Enhancer Primary monocytes fromperipheralblood blood
20 chr6:5086800-5087400 Bivalent Enhancer Brain Hippocampus Middle brain
21 chr6:5086800-5087400 Bivalent Enhancer Duodenum Mucosa Duodenum
22 chr6:5086800-5087400 Bivalent Enhancer Fetal Muscle Trunk muscle
23 chr6:5086800-5087400 Bivalent Enhancer Fetal Muscle Leg muscle
24 chr6:5086800-5087400 Active TSS Stomach Smooth Muscle stomach
25 chr6:5086800-5087800 Bivalent Enhancer Primary hematopoietic stem cells short term culture blood
26 chr6:5086800-5088000 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr6:5086800-5088000 Enhancers Right Atrium heart
28 chr6:5086800-5088200 Bivalent Enhancer H1 Cell Line embryonic stem cell
29 chr6:5086800-5088200 Bivalent Enhancer HUES6 Cell Line embryonic stem cell
30 chr6:5086800-5088200 Enhancers Fetal Heart heart
31 chr6:5086800-5088200 Enhancers Right Ventricle heart
32 chr6:5086800-5090600 Weak transcription Aorta Aorta
33 chr6:5087000-5087200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr6:5087000-5087200 Active TSS Adipose Nuclei Adipose
35 chr6:5087000-5087400 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
36 chr6:5087000-5087400 Bivalent Enhancer Monocytes-CD14+_RO01746 blood
37 chr6:5087000-5087800 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr6:5087000-5088000 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr6:5087000-5088200 Bivalent Enhancer iPS DF 19.11 Cell Line embryonic stem cell
40 chr6:5087000-5088200 Enhancers Left Ventricle heart

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