Variant report

Variant	rs397707657
Chromosome Location	chr20:52335100-52335101
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction
ENSG00000124226	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000121068	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055342	chr20:52126973-52352323	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	214 gene(s)	inside rSNPs	diseases
2	esv3412883	chr20:52176349-52393416	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
3	nsv834007	chr20:52213864-52404557	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	174 gene(s)	inside rSNPs	diseases
4	nsv912935	chr20:52221906-52337118	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	101 gene(s)	inside rSNPs	diseases
5	nsv912936	chr20:52250876-52344962	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv912937	chr20:52251863-52344962	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
7	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
8	esv1813335	chr20:52331815-52335833	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	esv1813816	chr20:52331815-52335833	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	esv12635	chr20:52331839-52337078	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
11	esv3440215	chr20:52331861-52336698	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	esv3369417	chr20:52332945-52337843	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
13	esv3359850	chr20:52333245-52337443	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	esv1804249	chr20:52333788-52335833	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52330400-52341600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:52330800-52337400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr20:52331200-52340600	Weak transcription	Placenta	Placenta
4	chr20:52331200-52352600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr20:52331800-52336200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr20:52332200-52340400	Weak transcription	HepG2	liver
7	chr20:52332400-52335400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr20:52332400-52335600	Weak transcription	GM12878-XiMat	blood
9	chr20:52333600-52337400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr20:52334600-52335400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr20:52334600-52335600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr20:52334800-52335400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr20:52334800-52336400	Enhancers	Primary B cells from cord blood	blood
14	chr20:52334800-52337400	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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