Variant report

Variant	rs397716949
Chromosome Location	chr14:71927997-71927998
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf57-1	chr14:71927903-71931274	ENSG00000251156

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1066278	chr14:71927996-71927997	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71907000-71930000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:71907000-71930600	Weak transcription	HSMM	muscle
3	chr14:71908200-71935400	Weak transcription	Primary T cells from cord blood	blood
4	chr14:71915800-71938600	Weak transcription	Small Intestine	intestine
5	chr14:71916400-71932000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr14:71916600-71932800	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:71920200-71931800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:71921800-71930000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:71921800-71933200	Weak transcription	Osteobl	bone
10	chr14:71921800-71940600	Weak transcription	Spleen	Spleen
11	chr14:71922000-71930600	Weak transcription	Hela-S3	cervix
12	chr14:71922000-71931800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:71922000-71933000	Weak transcription	Fetal Lung	lung
14	chr14:71922200-71929400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr14:71922200-71929400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr14:71922200-71932800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr14:71922200-71944600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr14:71925000-71932000	Weak transcription	Thymus	Thymus
19	chr14:71925200-71929200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:71925800-71930000	Weak transcription	Fetal Stomach	stomach
21	chr14:71925800-71940600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:71926000-71929800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:71926400-71932600	Weak transcription	Brain Substantia Nigra	brain
24	chr14:71926600-71929000	Weak transcription	Fetal Intestine Large	intestine
25	chr14:71926800-71929400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:71927000-71928200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:71927000-71928200	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr14:71927000-71928400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:71927000-71930800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr14:71927200-71928000	Strong transcription	Primary B cells from cord blood	blood
31	chr14:71927200-71938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:71927200-71940400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:71927400-71928000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:71927400-71932800	Weak transcription	Stomach Mucosa	stomach
35	chr14:71927600-71928000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr14:71927600-71928200	Strong transcription	Aorta	Aorta
37	chr14:71927600-71928200	ZNF genes & repeats	GM12878-XiMat	blood
38	chr14:71927600-71929800	Enhancers	K562	blood
39	chr14:71927600-71938800	Weak transcription	NHEK	skin
40	chr14:71927800-71928000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
41	chr14:71927800-71932200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr14:71927800-71938800	Weak transcription	HMEC	breast

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