Variant report

Variant	rs397717890
Chromosome Location	chr11:8454811-8454812
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv519052	chr11:8453594-8474884	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	esv1297342	chr11:8454810-8454811	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8446400-8464000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8447800-8456000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:8447800-8464200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:8448000-8461000	Weak transcription	Ovary	ovary
5	chr11:8448200-8455200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:8448200-8456000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:8451600-8456000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:8451600-8463600	Weak transcription	Fetal Heart	heart
9	chr11:8451600-8464000	Weak transcription	Left Ventricle	heart
10	chr11:8453800-8464000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:8454400-8458200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:8454600-8456200	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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