Variant report
| Variant | rs397742067 |
|---|---|
| Chromosome Location | chr12:58517599-58517600 |
| allele | -/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:8 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:58516937..58519947-chr17:41380326..41383375,3 | K562 | blood: | |
| 2 | chr12:58516945..58519917-chr17:41466381..41467898,2 | K562 | blood: | |
| 3 | chr12:58516937..58518437-chr17:41400928..41402668,2 | MCF-7 | breast: | |
| 4 | chr12:58516917..58519927-chr17:41462306..41466299,7 | K562 | blood: | |
| 5 | chr12:58516917..58519917-chr3:73158604..73161610,3 | K562 | blood: | |
| 6 | chr11:62607619..62609220-chr12:58516927..58518437,3 | MCF-7 | breast: | |
| 7 | chr12:58516925..58518425-chr17:41438461..41440788,2 | MCF-7 | breast: | |
| 8 | chr12:58516917..58519927-chr17:41462306..41466156,7 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236383 | Chromatin interaction |
| ENSG00000223247 | Chromatin interaction |
| ENSG00000188825 | Chromatin interaction |
| ENSG00000133316 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899124 | chr12:58391839-58883507 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv729 | chr12:58490094-58535466 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv3332556 | chr12:58499734-58525494 | Enhancers Active TSS Weak transcription | Chromatin interactive region | 4 gene(s) | inside rSNPs | n/a |
| 4 | esv3367170 | chr12:58500734-58523126 | Weak transcription Enhancers Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | n/a |
| 5 | esv2760247 | chr12:58516781-58525282 | Weak transcription Active TSS Enhancers | Chromatin interactive region | 4 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
