Variant report

Variant	rs397744442
Chromosome Location	chr8:95424611-95424612
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95420600..95422190-chr8:95424362..95426014,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1031480	chr8:95375696-95447407	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3444477	chr8:95424249-95424717	Genic enhancers Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv378998	chr8:95424610-95424611	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1410497	chr8:95424610-95424612	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95386000-95429200	Weak transcription	NHDF-Ad	bronchial
2	chr8:95392200-95430200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:95392600-95424800	Weak transcription	Hela-S3	cervix
4	chr8:95393200-95447000	Weak transcription	K562	blood
5	chr8:95404200-95429600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:95408600-95429000	Weak transcription	HMEC	breast
7	chr8:95409400-95443000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:95412200-95447200	Weak transcription	Fetal Thymus	thymus
9	chr8:95412400-95430000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:95416200-95429400	Weak transcription	HSMM	muscle
11	chr8:95416800-95445200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:95417200-95428800	Weak transcription	Dnd41	blood
13	chr8:95419000-95429400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:95419200-95429400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:95420800-95432000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:95422000-95430600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:95423200-95429800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:95423200-95430200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:95423600-95425200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr8:95423600-95429800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr8:95423600-95430000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:95423600-95430000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:95423800-95425400	Weak transcription	GM12878-XiMat	blood
24	chr8:95424200-95424800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:95424600-95428800	Weak transcription	A549	lung

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