Variant report

Variant	rs397747696
Chromosome Location	chr8:48265642-48265643
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:48263378..48268282-chr8:48268711..48274538,7	MCF-7	breast:
2	chr8:48264421..48266947-chr8:48288790..48290307,2	MCF-7	breast:
3	chr8:48264373..48267024-chr8:48650520..48652799,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221869	Chromatin interaction
ENSG00000164808	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015347	chr8:47698082-48318579	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv539593	chr8:47698082-48318579	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	esv3693377	chr8:47824261-48582964	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv491863	chr8:48053825-48586176	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv2758155	chr8:48188989-48321308	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759610	chr8:48188989-48321308	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1817304	chr8:48205314-48321308	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1034660	chr8:48265109-48411279	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48209400-48266000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:48228600-48265800	Weak transcription	K562	blood
3	chr8:48230400-48267400	Weak transcription	Spleen	Spleen
4	chr8:48238800-48274600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:48239000-48265800	Weak transcription	Aorta	Aorta
6	chr8:48247800-48276400	Weak transcription	Colonic Mucosa	Colon
7	chr8:48248800-48309600	Weak transcription	Thymus	Thymus
8	chr8:48249200-48282000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:48249800-48266000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:48249800-48267200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:48249800-48277400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:48249800-48277800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr8:48253400-48267200	Weak transcription	Lung	lung
14	chr8:48253400-48274400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr8:48253600-48273800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:48254600-48268400	Weak transcription	Gastric	stomach
17	chr8:48255000-48265800	Weak transcription	Ovary	ovary
18	chr8:48256200-48274200	Weak transcription	Esophagus	oesophagus
19	chr8:48256400-48272200	Weak transcription	GM12878-XiMat	blood
20	chr8:48256400-48274200	Weak transcription	Primary T cells from cord blood	blood
21	chr8:48256400-48276200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr8:48256400-48276800	Weak transcription	Dnd41	blood
23	chr8:48256400-48281000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:48256600-48267400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:48256600-48273000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr8:48256800-48265800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:48256800-48265800	Weak transcription	Fetal Muscle Leg	muscle
28	chr8:48257000-48265800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:48260400-48265800	Weak transcription	HepG2	liver
30	chr8:48262400-48265800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:48262400-48309600	Weak transcription	Fetal Stomach	stomach
32	chr8:48263200-48265800	Weak transcription	Fetal Intestine Small	intestine
33	chr8:48263200-48297200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:48264400-48265800	Enhancers	Osteobl	bone
35	chr8:48264400-48267000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:48264400-48276000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:48264600-48266200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:48264600-48266200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr8:48264600-48266200	Enhancers	Pancreas	Pancrea
40	chr8:48264800-48265800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:48264800-48265800	Enhancers	Hela-S3	cervix
42	chr8:48264800-48266400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:48264800-48266400	Enhancers	HMEC	breast
44	chr8:48264800-48266600	Enhancers	NHEK	skin
45	chr8:48264800-48271000	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr8:48265000-48265800	Enhancers	Muscle Satellite Cultured Cells	--
47	chr8:48265000-48265800	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr8:48265000-48266200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:48265000-48266600	Enhancers	NHLF	lung
50	chr8:48265000-48266800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links