Variant report

Variant	rs397753858
Chromosome Location	chr12:105063206-105063207
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:105058711..105060568-chr12:105060873..105063614,2	K562	blood:
2	chr12:105060606..105063528-chr12:105064614..105066569,2	K562	blood:
3	chr12:105047695..105049716-chr12:105062414..105064502,2	MCF-7	breast:
4	chr12:105061726..105063507-chr12:105070074..105072816,2	MCF-7	breast:
5	chr12:104775343..104776255-chr12:105062936..105063476,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3439380	chr12:105062222-105066520	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105051000-105065000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:105051800-105065000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:105060200-105068400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:105060400-105066800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr12:105060400-105067000	Enhancers	Pancreas	Pancrea
6	chr12:105060600-105064000	Enhancers	Fetal Brain Female	brain
7	chr12:105060600-105064400	Enhancers	A549	lung
8	chr12:105060600-105064600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:105060600-105066200	Enhancers	Fetal Lung	lung
10	chr12:105060600-105066600	Enhancers	Brain Cingulate Gyrus	brain
11	chr12:105060800-105065800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:105060800-105067800	Enhancers	Placenta	Placenta
13	chr12:105061000-105067800	Enhancers	Gastric	stomach
14	chr12:105061000-105068000	Enhancers	Fetal Muscle Leg	muscle
15	chr12:105061000-105068200	Enhancers	Fetal Stomach	stomach
16	chr12:105061200-105066200	Enhancers	Duodenum Mucosa	Duodenum
17	chr12:105061200-105067200	Enhancers	Adipose Nuclei	Adipose
18	chr12:105061200-105067200	Enhancers	Left Ventricle	heart
19	chr12:105061200-105067800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:105061200-105068200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr12:105061400-105063800	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr12:105061400-105064200	Bivalent Enhancer	Stomach Mucosa	stomach
23	chr12:105061400-105065600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr12:105061400-105066200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr12:105061400-105067200	Enhancers	Brain Angular Gyrus	brain
26	chr12:105061600-105064000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr12:105061600-105066000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr12:105061600-105066200	Enhancers	Fetal Brain Male	brain
29	chr12:105061800-105063400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:105061800-105066000	Enhancers	HSMMtube	muscle
31	chr12:105061800-105066800	Enhancers	Primary hematopoietic stem cells	blood
32	chr12:105062000-105063400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:105062000-105063800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr12:105062000-105064400	Enhancers	Fetal Muscle Trunk	muscle
35	chr12:105062000-105064400	Enhancers	Ovary	ovary
36	chr12:105062000-105065000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr12:105062000-105065800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr12:105062000-105066200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr12:105062000-105066600	Enhancers	Primary B cells from peripheral blood	blood
40	chr12:105062000-105066800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr12:105062000-105066800	Enhancers	Lung	lung
42	chr12:105062000-105067000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr12:105062000-105068000	Enhancers	NHLF	lung
44	chr12:105062000-105068400	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr12:105062200-105063400	Enhancers	Primary B cells from cord blood	blood
46	chr12:105062200-105063400	Enhancers	GM12878-XiMat	blood
47	chr12:105062200-105063600	Enhancers	K562	blood
48	chr12:105062200-105064000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr12:105062200-105064200	Enhancers	Fetal Kidney	kidney
50	chr12:105062200-105064800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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