Variant report

Variant	rs397802965
Chromosome Location	chr3:83894206-83894207
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1798193	chr3:83743689-83976987	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv523566	chr3:83768568-84006037	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1012918	chr3:83784488-84191829	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv536610	chr3:83784488-84191829	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv999325	chr3:83832320-84049295	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv460742	chr3:83852918-83907751	Enhancers Strong transcription Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590812	chr3:83852918-83907751	Enhancers Active TSS Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877072	chr3:83877684-83928479	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv428740	chr3:83886472-84069201	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv3522495	chr3:83890762-83896260	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
12	esv3522499	chr3:83891312-83896010	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3522494	chr3:83891885-83895007	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
14	esv3522497	chr3:83891898-83894913	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3522498	chr3:83891929-83894882	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
16	esv3522500	chr3:83891929-83894882	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3405311	chr3:83893287-83896135	Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv3427703	chr3:83893612-83896010	Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3437965	chr3:83894112-83895510	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83883800-83897800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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