Variant report

Variant	rs397832527
Chromosome Location	chr11:58979530-58979531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2758272	chr11:58700092-59008673	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2759830	chr11:58700092-59008673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58973400-58983200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:58973600-58982000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:58973800-58979600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:58973800-58984000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:58974800-58980200	Weak transcription	Brain Germinal Matrix	brain
6	chr11:58975000-58980400	Weak transcription	Fetal Brain Female	brain
7	chr11:58975200-58980000	Weak transcription	Lung	lung
8	chr11:58975400-58980000	Active TSS	Duodenum Mucosa	Duodenum
9	chr11:58975400-58986600	Weak transcription	Gastric	stomach
10	chr11:58975600-58980200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:58975800-58980000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:58975800-58980400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:58975800-58980400	Active TSS	Fetal Intestine Large	intestine
14	chr11:58975800-58980800	Active TSS	Adipose Nuclei	Adipose
15	chr11:58975800-58981800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:58976000-58980400	Active TSS	Placenta	Placenta
17	chr11:58976000-58989400	Weak transcription	Stomach Mucosa	stomach
18	chr11:58976200-58980400	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr11:58976200-58980400	Active TSS	Fetal Muscle Leg	muscle
20	chr11:58976400-58981000	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr11:58976600-58980400	Active TSS	Liver	Liver
22	chr11:58977000-58980400	Active TSS	Rectal Mucosa Donor 31	rectum
23	chr11:58977000-58981000	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr11:58977200-58980200	Active TSS	Primary monocytes fromperipheralblood	blood
25	chr11:58977200-58981200	Active TSS	Rectal Smooth Muscle	rectum
26	chr11:58977400-58980200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:58977400-58981000	Weak transcription	HSMMtube	muscle
28	chr11:58977400-58981400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:58977600-58981600	Flanking Active TSS	GM12878-XiMat	blood
30	chr11:58977600-58984000	Weak transcription	Fetal Lung	lung
31	chr11:58977800-58980400	Active TSS	Spleen	Spleen
32	chr11:58977800-58980600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
33	chr11:58978000-58980000	Weak transcription	Fetal Kidney	kidney
34	chr11:58978000-58980400	Active TSS	Left Ventricle	heart
35	chr11:58978000-58980400	Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr11:58978200-58980000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:58978200-58981000	Flanking Active TSS	Primary B cells from peripheral blood	blood
38	chr11:58978400-58980400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:58978600-58979800	Active TSS	Pancreas	Pancrea
40	chr11:58978600-58980000	Weak transcription	Fetal Thymus	thymus
41	chr11:58978600-58984000	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:58978800-58979600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr11:58978800-58980200	Active TSS	Brain Substantia Nigra	brain
44	chr11:58979000-58980200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr11:58979200-58979800	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr11:58979200-58980400	Active TSS	Fetal Intestine Small	intestine
47	chr11:58979200-58989600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:58979400-58980000	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:58979400-58983800	Weak transcription	Fetal Stomach	stomach

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