Variant report

Variant	rs397853642
Chromosome Location	chr15:73285428-73285429
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73283925..73285701-chr15:73287876..73289544,2	K562	blood:
2	chr15:73280099..73282772-chr15:73284444..73286998,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv528233	chr15:73284181-73287152	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1705524	chr15:73285427-73285428	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv91046	chr15:73285428-73285428	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73278000-73286200	Weak transcription	Fetal Brain Male	brain
2	chr15:73282800-73285600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr15:73283400-73285800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:73283600-73286000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:73283800-73285800	Enhancers	Osteobl	bone
6	chr15:73284000-73287200	Enhancers	Ovary	ovary
7	chr15:73284000-73289800	Enhancers	Fetal Lung	lung
8	chr15:73284000-73294800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:73284200-73285800	Enhancers	Psoas Muscle	Psoas
10	chr15:73284200-73286800	Weak transcription	NHEK	skin
11	chr15:73284200-73287000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:73284400-73290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:73284600-73285600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:73284600-73286800	Enhancers	Adipose Nuclei	Adipose
15	chr15:73284600-73290400	Enhancers	Fetal Stomach	stomach
16	chr15:73284800-73285600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:73284800-73285600	Enhancers	Colonic Mucosa	Colon
18	chr15:73284800-73285800	Enhancers	Fetal Muscle Trunk	muscle
19	chr15:73284800-73285800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr15:73284800-73286800	Enhancers	Aorta	Aorta
21	chr15:73284800-73287000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr15:73284800-73288800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr15:73285000-73285800	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr15:73285000-73286200	Enhancers	Stomach Smooth Muscle	stomach
25	chr15:73285000-73289200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:73285000-73292400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:73285200-73286200	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:73285200-73286200	Weak transcription	Fetal Intestine Small	intestine
29	chr15:73285200-73286400	Weak transcription	Fetal Kidney	kidney
30	chr15:73285200-73287200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:73285200-73287200	Weak transcription	NHLF	lung
32	chr15:73285400-73285600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:73285400-73285600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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