Variant report

Variant	rs397877344
Chromosome Location	chr3:98602039-98602040
allele	-/AT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:98595385..98598220-chr3:98601282..98604965,3	K562	blood:
2	chr3:98601246..98603654-chr3:98609491..98611352,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1009032	chr3:98514221-98607721	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	esv3441569	chr3:98585311-98607020	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	esv2606873	chr3:98601225-98602816	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98575400-98603800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:98575800-98603200	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:98575800-98603800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:98583400-98611400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:98584400-98607200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:98584600-98604200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:98587200-98604600	Weak transcription	Ovary	ovary
8	chr3:98589200-98602200	Weak transcription	NHLF	lung
9	chr3:98589400-98609200	Weak transcription	Fetal Intestine Large	intestine
10	chr3:98589800-98604000	Weak transcription	Fetal Stomach	stomach
11	chr3:98590000-98609600	Weak transcription	Brain Anterior Caudate	brain
12	chr3:98590800-98604600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:98591400-98602200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:98591400-98604200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:98591600-98604600	Weak transcription	Aorta	Aorta
16	chr3:98592600-98604600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:98593800-98604600	Weak transcription	Psoas Muscle	Psoas
18	chr3:98593800-98619400	Weak transcription	Small Intestine	intestine
19	chr3:98594400-98616600	Weak transcription	Fetal Brain Male	brain
20	chr3:98594600-98602200	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr3:98594600-98604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:98595000-98603600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:98595200-98608800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:98596000-98604000	Weak transcription	K562	blood
25	chr3:98596200-98606600	Weak transcription	HepG2	liver
26	chr3:98596800-98604200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:98597000-98609000	Weak transcription	Right Ventricle	heart
28	chr3:98597400-98619000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:98597600-98602400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:98597600-98602800	Strong transcription	HMEC	breast
31	chr3:98597800-98602800	Strong transcription	Osteobl	bone
32	chr3:98597800-98604200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr3:98598000-98603800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr3:98598200-98602200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:98598200-98608400	Weak transcription	Fetal Intestine Small	intestine
36	chr3:98598400-98604200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:98599000-98602200	Strong transcription	NH-A	brain
38	chr3:98599000-98603200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:98599000-98603200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:98599000-98603800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:98599200-98609400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:98599400-98603600	Weak transcription	Adipose Nuclei	Adipose
43	chr3:98599600-98602400	Weak transcription	Fetal Heart	heart
44	chr3:98599600-98602600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:98599600-98603800	Weak transcription	Fetal Kidney	kidney
46	chr3:98599800-98609000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:98599800-98618400	Weak transcription	Fetal Brain Female	brain
48	chr3:98600000-98603600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:98600000-98604200	Weak transcription	Fetal Muscle Leg	muscle
50	chr3:98600000-98609600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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