Variant report

Variant	rs397896390
Chromosome Location	chrX:73565645-73565646
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv520605	chrX:73549327-73569476	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2830082	chrX:73564051-73635867	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73563600-73568800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chrX:73564600-73565800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:73565200-73566600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chrX:73565400-73566600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chrX:73565600-73565800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chrX:73565600-73565800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chrX:73565600-73566200	Enhancers	K562	blood
8	chrX:73565600-73566400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chrX:73565600-73566600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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