Variant report

Variant	rs397987653
Chromosome Location	chr2:212197002-212197003
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv584313	chr2:212176967-212224689	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	esv1564445	chr2:212197001-212197002	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212193600-212198200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:212194200-212199000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:212194800-212199000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:212195400-212198400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:212195400-212199000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:212196000-212197600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:212196400-212197600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:212196600-212197800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:212196600-212198200	Weak transcription	Hela-S3	cervix
10	chr2:212196800-212198200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:212197000-212197200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr2:212197000-212198400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:212197000-212199000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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