Variant report

Variant	rs3980193
Chromosome Location	chrY:21056832-21056833
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10172335	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10186252	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10206651	0.84[EUR][1000 genomes]
rs10207205	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10209578	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12616211	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13395200	0.81[AMR][1000 genomes]
rs13426958	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1552444	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4322870	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4392291	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4538235	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72928099	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7558983	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7558985	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7575968	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7588183	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7600111	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915569	chrY:20707618-21649354	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv497825	chrY:20826182-21640237	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv533955	chrY:20826207-21640200	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869239	chrY:20936502-21591074	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:21056000-21065200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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