The 2.0 version of rSNPBase

Variant report

Variant rs398023
Chromosome Location chr21:46582924-46582925
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:46557000-46604800 Weak transcription HUES64 Cell Line embryonic stem cell
2 chr21:46557200-46591800 Weak transcription HUVEC blood vessel
3 chr21:46558600-46588800 Weak transcription Colonic Mucosa Colon
4 chr21:46560800-46586400 Weak transcription Liver Liver
5 chr21:46563000-46595600 Weak transcription Pancreas Pancrea
6 chr21:46566000-46583200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr21:46569000-46587000 Weak transcription NHEK skin
8 chr21:46572000-46584000 Weak transcription Ovary ovary
9 chr21:46572000-46584000 Weak transcription Stomach Mucosa stomach
10 chr21:46572200-46595600 Weak transcription Brain Germinal Matrix brain
11 chr21:46572400-46601000 Weak transcription Fetal Brain Female brain
12 chr21:46572800-46604800 Weak transcription Duodenum Mucosa Duodenum
13 chr21:46573000-46588400 Weak transcription Thymus Thymus
14 chr21:46573600-46591800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr21:46573800-46586800 Weak transcription Adipose Nuclei Adipose
16 chr21:46574200-46589200 Weak transcription Primary hematopoietic stem cells blood
17 chr21:46574800-46583600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr21:46575000-46586400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr21:46575000-46587000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr21:46575000-46595600 Weak transcription Dnd41 blood
21 chr21:46575000-46601000 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr21:46575200-46583600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr21:46575200-46586600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr21:46575200-46587000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr21:46575400-46583200 Weak transcription Right Atrium heart
26 chr21:46575400-46583400 Weak transcription Left Ventricle heart
27 chr21:46575400-46583400 Weak transcription Spleen Spleen
28 chr21:46575400-46587800 Weak transcription Rectal Smooth Muscle rectum
29 chr21:46575400-46588800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr21:46575400-46588800 Weak transcription Primary T killer naive cells fromperipheralblood blood
31 chr21:46575400-46589000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr21:46575400-46604800 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr21:46575600-46588800 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr21:46575800-46583200 Weak transcription Brain Angular Gyrus brain
35 chr21:46576200-46588800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr21:46576200-46595800 Weak transcription Fetal Lung lung
37 chr21:46577400-46583400 Genic enhancers Muscle Satellite Cultured Cells --
38 chr21:46578000-46583400 Weak transcription Brain Inferior Temporal Lobe brain
39 chr21:46578000-46583600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr21:46578000-46583600 Weak transcription HMEC breast
41 chr21:46578800-46588800 Weak transcription Brain Cingulate Gyrus brain
42 chr21:46579400-46583400 Strong transcription Primary T cells from cord blood blood
43 chr21:46579600-46584800 Enhancers Skeletal Muscle Female skeletal muscle
44 chr21:46580000-46583000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
45 chr21:46580400-46591800 Weak transcription Primary B cells from peripheral blood blood
46 chr21:46580400-46595600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr21:46581000-46585200 Enhancers Breast Myoepithelial Primary Cells Breast
48 chr21:46581400-46583400 Weak transcription Esophagus oesophagus
49 chr21:46581400-46583800 Strong transcription Fetal Stomach stomach
50 chr21:46581600-46583000 Genic enhancers Fetal Muscle Leg muscle

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Last update: Aug 31, 2015