Variant report

Variant	rs398027475
Chromosome Location	chr15:58357422-58357423
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr15:58356932-58357428	K562	blood:	n/a	n/a
2	GABPA	chr15:58357383-58358385	K562	blood:	n/a	n/a
3	UBTF	chr15:58356671-58358871	K562	blood:	n/a	n/a
4	JUND	chr15:58357213-58357467	K562	blood:	n/a	n/a
5	MAX	chr15:58357158-58358869	K562	blood:	n/a	n/a
6	E2F4	chr15:58357209-58358827	K562	blood:	n/a	chr15:58358094-58358105 chr15:58358480-58358490
7	POLR2A	chr15:58357123-58358920	K562	blood:	n/a	n/a
8	POLR2A	chr15:58357099-58358871	K562	blood:	n/a	n/a
9	TBP	chr15:58357252-58357580	H1-hESC	embryonic stem cell:	n/a	n/a
10	MAZ	chr15:58357191-58359061	K562	blood:	n/a	n/a
11	MAX	chr15:58357187-58358886	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr15:58357072-58358943	K562	blood:	n/a	n/a
13	POLR2A	chr15:58357299-58358868	K562	blood:	n/a	n/a
14	RCOR1	chr15:58357180-58357427	K562	blood:	n/a	n/a
15	MYC	chr15:58356499-58358940	K562	blood:	n/a	n/a
16	TBP	chr15:58357061-58359219	K562	blood:	n/a	n/a
17	POLR2A	chr15:58356741-58359187	K562	blood:	n/a	n/a
18	HMGN3	chr15:58357173-58358858	K562	blood:	n/a	n/a
19	E2F6	chr15:58357271-58358922	K562	blood:	n/a	chr15:58358480-58358490
20	SUZ12	chr15:58356332-58358890	NT2-D1	testis:	n/a	n/a
21	SIN3A	chr15:58357270-58357952	H1-hESC	embryonic stem cell:	n/a	n/a
22	ZMIZ1	chr15:58357396-58357426	K562	blood:	n/a	n/a
23	MYC	chr15:58356500-58359059	K562	blood:	n/a	n/a
24	POLR2A	chr15:58357114-58359076	K562	blood:	n/a	n/a
25	E2F6	chr15:58357236-58357455	K562	blood:	n/a	n/a
26	SIN3AK20	chr15:58357057-58358332	K562	blood:	n/a	n/a
27	CCNT2	chr15:58356876-58358872	K562	blood:	n/a	chr15:58358513-58358522
28	CHD1	chr15:58357405-58357503	H1-hESC	embryonic stem cell:	n/a	n/a
29	TAL1	chr15:58357303-58357434	K562	blood:	n/a	n/a
30	RAD21	chr15:58357354-58357540	H1-hESC	embryonic stem cell:	n/a	n/a
31	E2F6	chr15:58357135-58358920	H1-hESC	embryonic stem cell:	n/a	chr15:58357199-58357214 chr15:58358480-58358490
32	UBTF	chr15:58356794-58359117	K562	blood:	n/a	n/a
33	RCOR1	chr15:58357179-58357478	K562	blood:	n/a	n/a
34	POLR2A	chr15:58356666-58359335	K562	blood:	n/a	n/a
35	POLR2A	chr15:58357074-58359305	K562	blood:	n/a	n/a
36	MAX	chr15:58357073-58358961	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:58306217..58308259-chr15:58356597..58358737,2	K562	blood:
2	chr15:58356974..58359469-chr15:60688408..60691704,3	K562	blood:
3	chr15:58328560..58331091-chr15:58356467..58358929,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259285	TF binding region
ENSG00000128918	Chromatin interaction
ENSG00000182718	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3427988	chr15:58356685-58359533	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1148073	chr15:58357421-58357422	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58353400-58358800	Active TSS	K562	blood
2	chr15:58353600-58359000	Active TSS	Fetal Kidney	kidney
3	chr15:58354200-58358800	Active TSS	Ovary	ovary
4	chr15:58354400-58358800	Active TSS	Right Atrium	heart
5	chr15:58357000-58357600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr15:58357000-58357600	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
7	chr15:58357000-58357600	Bivalent/Poised TSS	Primary B cells from cord blood	blood
8	chr15:58357000-58358800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr15:58357200-58357600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
10	chr15:58357200-58357600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
11	chr15:58357200-58357600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:58357200-58357600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:58357200-58357600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:58357200-58357600	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
15	chr15:58357200-58357600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
16	chr15:58357200-58357800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
17	chr15:58357200-58357800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
18	chr15:58357200-58357800	Bivalent/Poised TSS	Fetal Lung	lung
19	chr15:58357200-58357800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
20	chr15:58357200-58357800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
21	chr15:58357200-58357800	Enhancers	Gastric	stomach
22	chr15:58357200-58358000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:58357200-58358000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
24	chr15:58357200-58358000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
25	chr15:58357200-58358200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
26	chr15:58357200-58358200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
27	chr15:58357200-58358200	Bivalent Enhancer	Fetal Thymus	thymus
28	chr15:58357200-58358200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
29	chr15:58357200-58358400	Active TSS	Right Ventricle	heart
30	chr15:58357200-58358600	Bivalent/Poised TSS	Left Ventricle	heart
31	chr15:58357200-58358600	Bivalent/Poised TSS	NHLF	lung
32	chr15:58357200-58358800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:58357200-58358800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
34	chr15:58357200-58358800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr15:58357200-58358800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:58357200-58358800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
37	chr15:58357200-58358800	Flanking Active TSS	Pancreas	Pancrea
38	chr15:58357200-58358800	Bivalent/Poised TSS	Psoas Muscle	Psoas
39	chr15:58357200-58359000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
40	chr15:58357200-58359200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
41	chr15:58357400-58357600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:58357400-58357600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:58357400-58357600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
44	chr15:58357400-58357600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
45	chr15:58357400-58357600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:58357400-58357600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
47	chr15:58357400-58357600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
48	chr15:58357400-58357600	Bivalent Enhancer	Placenta	Placenta
49	chr15:58357400-58357600	Active TSS	Lung	lung
50	chr15:58357400-58357600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum

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