Variant report

Variant	rs398038634
Chromosome Location	chr14:68991753-68991754
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68990548..68993032-chr14:69095034..69097852,2	MCF-7	breast:
2	chr14:68987315..68991799-chr14:69260586..69263580,4	MCF-7	breast:
3	chr14:68990794..68994075-chr14:69256455..69260885,5	MCF-7	breast:
4	chr14:68715321..68716856-chr14:68989735..68992199,2	MCF-7	breast:
5	chr14:68989438..68991863-chr14:69015676..69017457,2	MCF-7	breast:
6	chr14:68987292..68989067-chr14:68991224..68994887,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68983800-68991800	Enhancers	Fetal Stomach	stomach
2	chr14:68984200-68991800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:68984600-68991800	Enhancers	Placenta	Placenta
4	chr14:68985800-68994800	Weak transcription	Aorta	Aorta
5	chr14:68986000-68991800	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:68986000-68993400	Weak transcription	Brain Angular Gyrus	brain
7	chr14:68986400-68993000	Weak transcription	NH-A	brain
8	chr14:68987400-68991800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:68987400-68993600	Enhancers	HSMM	muscle
10	chr14:68987400-68996200	Enhancers	Pancreas	Pancrea
11	chr14:68987600-68992000	Enhancers	NHLF	lung
12	chr14:68987600-68993400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr14:68987800-68991800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:68987800-68991800	Enhancers	Fetal Kidney	kidney
15	chr14:68988000-68991800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:68988200-68992000	Enhancers	NHDF-Ad	bronchial
17	chr14:68988200-68993600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr14:68988400-68991800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr14:68988400-68993400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr14:68988600-68993800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:68988800-68991800	Weak transcription	Hela-S3	cervix
22	chr14:68988800-68993400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:68989000-68993000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr14:68989200-68993200	Weak transcription	Psoas Muscle	Psoas
25	chr14:68989400-68993000	Weak transcription	A549	lung
26	chr14:68989600-68993000	Weak transcription	Stomach Mucosa	stomach
27	chr14:68989600-68993000	Weak transcription	HMEC	breast
28	chr14:68989600-68993200	Weak transcription	Gastric	stomach
29	chr14:68989800-68993000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:68989800-68993800	Weak transcription	Primary B cells from cord blood	blood
31	chr14:68990000-68994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:68990000-68995400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr14:68990000-68995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr14:68990000-68996000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr14:68990200-68991800	Enhancers	Stomach Smooth Muscle	stomach
36	chr14:68990200-68993200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:68990200-68993200	Weak transcription	Brain Anterior Caudate	brain
38	chr14:68990200-68993200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr14:68990200-68993400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:68990200-68993400	Weak transcription	Right Ventricle	heart
41	chr14:68990200-68993800	Weak transcription	Primary B cells from peripheral blood	blood
42	chr14:68990200-68993800	Enhancers	HSMMtube	muscle
43	chr14:68990400-68992000	Weak transcription	Primary T cells from cord blood	blood
44	chr14:68990400-68993000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:68990400-68993200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr14:68990400-68993200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr14:68990400-68993600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr14:68990600-68992000	Enhancers	Fetal Intestine Large	intestine
49	chr14:68990800-68991800	Enhancers	Right Atrium	heart
50	chr14:68990800-68993000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links