Variant report

Variant	rs398038915
Chromosome Location	chr12:63232731-63232732
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63230714..63233409-chr12:63236744..63239259,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2485179	chr12:63231615-63233038	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2286763	chr12:63232238-63232916	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3488030	chr12:63232282-63232834	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3361639	chr12:63232299-63232811	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3503698	chr12:63232304-63232782	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3503699	chr12:63232334-63232780	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3503700	chr12:63232334-63232782	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3488052	chr12:63232338-63232800	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv5185	chr12:63232339-63232895	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3488019	chr12:63232342-63232817	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3488041	chr12:63232352-63232753	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3488064	chr12:63232388-63232734	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3488075	chr12:63232402-63232747	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63212600-63234600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:63218400-63234800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr12:63221600-63234200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr12:63222200-63235200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr12:63225400-63237600	Weak transcription	Liver	Liver
6	chr12:63226000-63234200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr12:63226000-63234600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:63226200-63240600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:63226400-63234000	Weak transcription	HepG2	liver
10	chr12:63227600-63237200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:63228400-63234000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr12:63228600-63234000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr12:63228600-63237600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:63228800-63234600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:63228800-63242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:63229200-63234000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr12:63229200-63234200	Weak transcription	Brain Substantia Nigra	brain
18	chr12:63229200-63237200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:63229200-63242200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr12:63229400-63234000	Weak transcription	Brain Hippocampus Middle	brain
21	chr12:63229400-63235400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:63229400-63235400	Weak transcription	Brain Anterior Caudate	brain
23	chr12:63229400-63238000	Weak transcription	A549	lung
24	chr12:63229400-63240400	Weak transcription	Osteobl	bone
25	chr12:63230000-63234200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:63230000-63234400	Weak transcription	Brain Angular Gyrus	brain
27	chr12:63231800-63233600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:63231800-63233600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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