Variant report

Variant	rs398060394
Chromosome Location	chr2:100897742-100897743
allele	-/TTTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100896929..100899724-chr2:100932462..100934829,2	K562	blood:
2	chr2:100895235..100899399-chr2:100936905..100939740,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHST10-2	chr2:100892673-100898479	NONHSAT072773

Variant related genes	Relation type
ENSG00000170500	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv1083680	chr2:100897741-100897745	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100879400-100900200	Weak transcription	Brain Substantia Nigra	brain
2	chr2:100880200-100898400	Weak transcription	A549	lung
3	chr2:100884200-100900200	Weak transcription	Brain Angular Gyrus	brain
4	chr2:100885600-100898200	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:100885600-100902000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:100887000-100900200	Weak transcription	Left Ventricle	heart
7	chr2:100887200-100898000	Weak transcription	Fetal Brain Female	brain
8	chr2:100887800-100901800	Weak transcription	Fetal Intestine Small	intestine
9	chr2:100888000-100898000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:100889400-100900200	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:100889600-100898200	Weak transcription	Fetal Brain Male	brain
12	chr2:100889600-100898400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:100890600-100900200	Weak transcription	Right Ventricle	heart
14	chr2:100891400-100900000	Weak transcription	Aorta	Aorta
15	chr2:100891800-100900200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:100891800-100907600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:100892000-100898000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:100892000-100898600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:100892000-100902000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:100892000-100904000	Weak transcription	Gastric	stomach
21	chr2:100892200-100898200	Weak transcription	Brain Germinal Matrix	brain
22	chr2:100892200-100900200	Weak transcription	Pancreas	Pancrea
23	chr2:100892200-100909800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr2:100892400-100900600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr2:100894400-100900400	Weak transcription	Brain Anterior Caudate	brain
26	chr2:100895600-100900200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:100896600-100898000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr2:100896600-100899000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr2:100896600-100900000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr2:100896600-100907000	Weak transcription	Spleen	Spleen
31	chr2:100896600-100907600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr2:100896800-100897800	Enhancers	K562	blood
33	chr2:100896800-100898200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr2:100896800-100898400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:100896800-100898800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:100897000-100898200	Weak transcription	Ovary	ovary
37	chr2:100897400-100897800	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr2:100897400-100898000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:100897400-100898800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr2:100897400-100899000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr2:100897400-100899000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr2:100897600-100897800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr2:100897600-100897800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr2:100897600-100897800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr2:100897600-100899000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:100897600-100899000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr2:100897600-100903600	Enhancers	Dnd41	blood

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