Variant report

Variant	rs398080919
Chromosome Location	chr2:191035969-191035970
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2505341	chr2:191035912-191037410	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1459301	chr2:191035969-191035970	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv202500	chr2:191035970-191035970	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191024400-191042200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:191034000-191036200	Enhancers	Fetal Intestine Large	intestine
3	chr2:191034400-191036200	Enhancers	K562	blood
4	chr2:191034600-191036000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:191034600-191037800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:191034800-191037000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr2:191035200-191037200	Weak transcription	Aorta	Aorta
8	chr2:191035400-191036600	Weak transcription	Small Intestine	intestine
9	chr2:191035600-191036000	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr2:191035600-191037000	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links