Variant report

Variant	rs398084536
Chromosome Location	chr5:145119534-145119535
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3341390	chr5:145118809-145122607	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3321856	chr5:145119009-145122457	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv3441444	chr5:145119384-145121932	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv1781972	chr5:145119534-145119535	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145105400-145179000	Weak transcription	Pancreas	Pancrea
2	chr5:145107200-145123200	Weak transcription	Aorta	Aorta
3	chr5:145109400-145120600	Weak transcription	Left Ventricle	heart
4	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
5	chr5:145110400-145143800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:145111200-145123000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:145111400-145166800	Weak transcription	K562	blood
8	chr5:145113600-145140000	Weak transcription	Ovary	ovary
9	chr5:145114000-145163400	Weak transcription	Small Intestine	intestine
10	chr5:145114600-145142400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:145114800-145139200	Weak transcription	Fetal Intestine Large	intestine
12	chr5:145115800-145143800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr5:145116400-145123200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:145119000-145123600	Weak transcription	Fetal Intestine Small	intestine
15	chr5:145119200-145120000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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