Variant report

Variant	rs3982269
Chromosome Location	chr10:110552149-110552150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11593382	0.94[ASN][1000 genomes]
rs11818211	0.94[EUR][1000 genomes]
rs12570728	0.84[EUR][1000 genomes]
rs12571386	0.94[EUR][1000 genomes]
rs12572118	0.94[EUR][1000 genomes]
rs12573133	0.94[EUR][1000 genomes]
rs1337547	0.95[EUR][1000 genomes]
rs1538125	0.94[EUR][1000 genomes]
rs1577855	0.86[EUR][1000 genomes]
rs1577857	0.96[ASN][1000 genomes]
rs17124956	0.86[EUR][1000 genomes]
rs17124959	0.86[EUR][1000 genomes]
rs17124963	0.86[EUR][1000 genomes]
rs17124967	0.89[EUR][1000 genomes]
rs17125119	0.90[ASN][1000 genomes]
rs17125159	0.94[EUR][1000 genomes]
rs1856167	0.86[EUR][1000 genomes]
rs2461318	0.90[EUR][1000 genomes]
rs2786589	0.84[EUR][1000 genomes]
rs3904798	0.94[EUR][1000 genomes]
rs4333960	0.99[ASN][1000 genomes]
rs58662988	0.94[EUR][1000 genomes]
rs58878892	0.94[EUR][1000 genomes]
rs58903160	0.87[EUR][1000 genomes]
rs6584882	0.86[EUR][1000 genomes]
rs6584883	0.86[EUR][1000 genomes]
rs6584887	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7083224	0.86[EUR][1000 genomes]
rs7083647	0.82[ASN][1000 genomes]
rs7085179	0.88[ASN][1000 genomes]
rs7085695	0.83[ASN][1000 genomes]
rs7086707	0.92[ASN][1000 genomes]
rs7100219	0.87[EUR][1000 genomes]
rs7893809	0.86[EUR][1000 genomes]
rs7898012	0.99[ASN][1000 genomes]
rs7901337	0.86[EUR][1000 genomes]
rs7901956	0.86[EUR][1000 genomes]
rs7906104	0.82[ASN][1000 genomes]
rs7909130	0.94[EUR][1000 genomes]
rs7914339	0.94[EUR][1000 genomes]
rs7914481	0.86[EUR][1000 genomes]
rs7917904	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7920978	0.94[EUR][1000 genomes]
rs7923374	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3429369	chr10:110454775-110753351	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2758240	chr10:110458987-110643496	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759782	chr10:110458987-110643496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110547400-110552200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr10:110547400-110552400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:110551800-110552400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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