Variant report

Variant	rs3986126
Chromosome Location	chr4:59535323-59535324
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1114341	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11728131	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13112271	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13139208	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13146375	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13150990	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13340249	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13340250	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1588285	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1588286	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1588287	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1588288	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1828205	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2166999	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2202834	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2412929	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28798982	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34081875	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34511950	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34683941	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34692112	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35112004	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36034190	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59902206	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66487742	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67755352	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831687	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7442023	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7672113	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7677073	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7683691	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7693969	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011418	chr4:59081528-59674340	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv879030	chr4:59379696-59548868	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv829945	chr4:59432673-59619034	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv879031	chr4:59434110-59915131	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv879032	chr4:59441027-59673650	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1000879	chr4:59467862-59602439	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv537104	chr4:59467862-59602439	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1005096	chr4:59507478-59709535	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv537105	chr4:59507478-59709535	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv879033	chr4:59521655-59631298	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59534800-59538000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:59535200-59536800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links