Variant report

Variant	rs399661
Chromosome Location	chr5:41267562-41267563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs364539	1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs380649	0.80[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs390035	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs392077	0.80[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs399760	0.80[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs407963	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs412685	0.97[ASN][1000 genomes]
rs418697	0.97[ASN][1000 genomes]
rs420448	0.97[ASN][1000 genomes]
rs422027	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs429017	1.00[CHB][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs433072	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs433224	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41264000-41267600	Weak transcription	Ovary	ovary
2	chr5:41264400-41270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:41264600-41269000	Weak transcription	Right Ventricle	heart
4	chr5:41264600-41270200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:41264800-41270400	Weak transcription	Stomach Mucosa	stomach
6	chr5:41265600-41268600	Weak transcription	Fetal Heart	heart
7	chr5:41266800-41270200	Weak transcription	Fetal Intestine Small	intestine
8	chr5:41267400-41269000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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