Variant report

Variant	rs403547
Chromosome Location	chr4:53833997-53833998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11133241	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1351709	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs301091	1.00[AMR][1000 genomes]
rs301094	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs301105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs301107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs301111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4293841	0.98[AFR][1000 genomes]
rs4864708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004889	chr4:53436500-54106281	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv537094	chr4:53436500-54106281	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv508280	chr4:53825060-53907661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:53786600-53861400	Weak transcription	Primary B cells from cord blood	blood
2	chr4:53808800-53836000	Weak transcription	Esophagus	oesophagus
3	chr4:53816200-53834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:53818200-53849800	Weak transcription	Primary T cells from cord blood	blood
5	chr4:53827400-53843600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:53829000-53842800	Weak transcription	Pancreas	Pancrea
7	chr4:53831800-53834200	Weak transcription	Fetal Brain Female	brain
8	chr4:53832400-53834800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:53833000-53835200	Enhancers	Placenta	Placenta
10	chr4:53833600-53839400	Weak transcription	NHDF-Ad	bronchial
11	chr4:53833800-53834000	Enhancers	Right Atrium	heart
12	chr4:53833800-53835000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:53833800-53835800	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links