Variant report

Variant	rs404374
Chromosome Location	chr9:17056680-17056681
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10810711	0.94[AFR][1000 genomes]
rs10962841	0.93[AFR][1000 genomes]
rs13295654	0.87[EUR][1000 genomes]
rs13298182	0.90[ASN][1000 genomes]
rs13299760	0.81[EUR][1000 genomes]
rs1617507	0.94[AFR][1000 genomes]
rs1617737	0.93[AFR][1000 genomes]
rs1685301	0.88[AFR][1000 genomes]
rs1685302	0.90[AFR][1000 genomes]
rs1725365	0.93[AFR][1000 genomes]
rs1948106	0.85[AFR][1000 genomes]
rs1948107	0.94[AFR][1000 genomes]
rs1948108	0.93[AFR][1000 genomes]
rs2129626	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2246	0.94[AFR][1000 genomes]
rs2450534	0.94[AFR][1000 genomes]
rs2462942	0.94[AFR][1000 genomes]
rs2481546	0.94[AFR][1000 genomes]
rs2481552	0.92[AFR][1000 genomes]
rs2481553	0.87[AFR][1000 genomes]
rs2492868	0.88[AFR][1000 genomes]
rs2492869	0.88[AFR][1000 genomes]
rs2492870	0.94[AFR][1000 genomes]
rs263567	0.85[AFR][1000 genomes]
rs2774632	0.91[AFR][1000 genomes]
rs2774633	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2815194	0.94[AFR][1000 genomes]
rs2950171	0.92[AFR][1000 genomes]
rs34953033	0.81[EUR][1000 genomes]
rs35878627	0.84[AFR][1000 genomes]
rs35979939	0.89[EUR][1000 genomes]
rs36076722	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36096349	0.81[EUR][1000 genomes]
rs366216	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs368289	0.94[AFR][1000 genomes]
rs369822	0.93[AFR][1000 genomes]
rs371653	0.93[AFR][1000 genomes]
rs375152	0.94[AFR][1000 genomes]
rs378128	0.93[AFR][1000 genomes]
rs378407	0.96[AFR][1000 genomes]
rs380225	0.87[AFR][1000 genomes]
rs380977	0.96[AFR][1000 genomes]
rs383580	0.96[AFR][1000 genomes]
rs386172	0.88[AFR][1000 genomes]
rs386620	0.96[AFR][1000 genomes]
rs387903	0.94[AFR][1000 genomes]
rs388786	0.96[AFR][1000 genomes]
rs389432	0.93[AFR][1000 genomes]
rs389733	0.96[AFR][1000 genomes]
rs390114	0.95[AFR][1000 genomes]
rs390228	0.96[AFR][1000 genomes]
rs391156	0.96[AFR][1000 genomes]
rs391486	0.83[AFR][1000 genomes]
rs391551	0.90[AFR][1000 genomes]
rs399430	0.94[AFR][1000 genomes]
rs400582	0.94[AFR][1000 genomes]
rs400972	0.94[AFR][1000 genomes]
rs404912	0.96[AFR][1000 genomes]
rs405039	0.81[AFR][1000 genomes]
rs407790	0.87[AFR][1000 genomes]
rs411013	0.94[AFR][1000 genomes]
rs412190	0.83[AFR][1000 genomes]
rs419062	0.87[AFR][1000 genomes]
rs420115	0.94[AFR][1000 genomes]
rs423395	0.94[AFR][1000 genomes]
rs425003	0.96[AFR][1000 genomes]
rs425343	0.82[AFR][1000 genomes]
rs425455	0.90[AFR][1000 genomes]
rs426761	0.94[AFR][1000 genomes]
rs428654	0.94[AFR][1000 genomes]
rs430616	0.95[AFR][1000 genomes]
rs431059	0.95[AFR][1000 genomes]
rs431342	0.94[AFR][1000 genomes]
rs435831	0.90[AFR][1000 genomes]
rs436873	0.93[AFR][1000 genomes]
rs441761	0.94[AFR][1000 genomes]
rs442431	0.94[AFR][1000 genomes]
rs444147	0.87[AFR][1000 genomes]
rs447681	0.94[AFR][1000 genomes]
rs448576	0.94[AFR][1000 genomes]
rs450371	0.95[AFR][1000 genomes]
rs452396	0.94[AFR][1000 genomes]
rs453801	0.94[AFR][1000 genomes]
rs454019	0.94[AFR][1000 genomes]
rs500581	0.85[AFR][1000 genomes]
rs503290	0.81[AFR][1000 genomes]
rs503467	0.94[AFR][1000 genomes]
rs62558260	0.89[EUR][1000 genomes]
rs62560516	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62560517	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62560531	0.89[ASN][1000 genomes]
rs62560532	0.90[ASN][1000 genomes]
rs914049	0.94[AFR][1000 genomes]
rs914050	0.94[AFR][1000 genomes]
rs914051	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv613692	chr9:16963863-17070633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv892656	chr9:17008137-17076367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv1021013	chr9:17045105-17072402	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1033462	chr9:17046823-17081683	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1019424	chr9:17049320-17081683	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17053200-17062600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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