Variant report

Variant	rs4045503
Chromosome Location	chr5:177952191-177952192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv462570	chr5:177860454-178010145	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv600423	chr5:177860454-178010145	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv462571	chr5:177898650-177961860	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv600424	chr5:177898650-177961860	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv471059	chr5:177919951-177965696	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv3437734	chr5:177950246-177954644	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
12	nsv600425	chr5:177950833-177952614	Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3445094	chr5:177950946-177953744	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	esv3378133	chr5:177951246-177953744	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases
15	esv2429795	chr5:177951313-177952909	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
16	esv6640	chr5:177951904-177952869	Genic enhancers Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv4301	chr5:177951923-177952878	Weak transcription Genic enhancers Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
18	esv3470260	chr5:177951931-177952804	Bivalent Enhancer Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
19	esv1948375	chr5:177951939-177952833	Genic enhancers Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
20	esv3522769	chr5:177951940-177952832	Weak transcription Bivalent Enhancer Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3522770	chr5:177951959-177952802	Weak transcription Genic enhancers Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv3470259	chr5:177951970-177952777	Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv3522768	chr5:177951999-177952765	Weak transcription	n/a	n/a	inside rSNPs	diseases
24	esv3522771	chr5:177951999-177952765	Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv21277	chr5:177952013-177952967	Weak transcription Bivalent Enhancer Genic enhancers Enhancers	n/a	n/a	inside rSNPs	diseases
26	nsv820848	chr5:177952013-177952967	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases
27	esv3470258	chr5:177952014-177952738	Weak transcription	n/a	n/a	inside rSNPs	diseases
28	nsv329434	chr5:177952021-177952440	Weak transcription	n/a	n/a	inside rSNPs	diseases
29	esv3470261	chr5:177952071-177952732	Weak transcription	n/a	n/a	inside rSNPs	diseases
30	nsv600426	chr5:177952120-177952614	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177947200-177953200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:177947800-177952800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:177948000-177952800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:177950400-177953800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:177951800-177952800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:177951800-177953000	Weak transcription	Right Atrium	heart

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