Variant report

Variant	rs405281
Chromosome Location	chr7:151062348-151062349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:151061890-151064401	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:151061987..151064107-chr7:151213847..151215610,2	K562	blood:
2	chr7:151055658..151057185-chr7:151059858..151062429,2	K562	blood:
3	chr7:150910419..150913240-chr7:151061501..151064470,2	K562	blood:
4	chr7:151062337..151064944-chr7:151144417..151146398,2	K562	blood:

Variant related genes	Relation type
NUB1	TF binding region
ENSG00000106615	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs367567	0.87[CHB][hapmap];0.81[GIH][hapmap]
rs386223	0.83[ASW][hapmap]
rs386956	0.91[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs390370	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs405281	LOC349136	cis	multi-tissue	Pritchard
rs405281	NUB1	Cis_1M	lymphoblastoid	RTeQTL
rs405281	NYREN18	cis	uninvolved skin	skin_eQTL
rs405281	NUB1	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151039400-151069800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:151049200-151072600	Weak transcription	Fetal Brain Male	brain
3	chr7:151049400-151063200	Weak transcription	Small Intestine	intestine
4	chr7:151049400-151077000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:151049400-151078000	Weak transcription	Stomach Mucosa	stomach
6	chr7:151051200-151069200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:151053600-151062400	Weak transcription	NHLF	lung
8	chr7:151053600-151065200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:151053600-151065200	Weak transcription	NHEK	skin
10	chr7:151053600-151065400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:151053600-151065400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr7:151053800-151073000	Weak transcription	Psoas Muscle	Psoas
13	chr7:151054000-151073200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:151054200-151071800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:151055800-151062600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:151055800-151063600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:151055800-151065800	Weak transcription	Spleen	Spleen
18	chr7:151055800-151069200	Weak transcription	Esophagus	oesophagus
19	chr7:151055800-151069600	Weak transcription	Gastric	stomach
20	chr7:151057600-151070600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:151058000-151062800	Weak transcription	Fetal Heart	heart
22	chr7:151058000-151065800	Weak transcription	Brain Substantia Nigra	brain
23	chr7:151058200-151065200	Weak transcription	Ovary	ovary
24	chr7:151058600-151063000	Weak transcription	NHDF-Ad	bronchial
25	chr7:151058800-151066600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:151058800-151069600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:151059000-151063200	Weak transcription	Colon Smooth Muscle	Colon
28	chr7:151059600-151065200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr7:151059600-151069600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:151059800-151063600	Weak transcription	NH-A	brain
31	chr7:151059800-151064400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:151059800-151065400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr7:151059800-151069800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:151059800-151078000	Weak transcription	HUVEC	blood vessel
35	chr7:151060000-151062400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:151060000-151062400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:151060000-151062400	Weak transcription	Pancreas	Pancrea
38	chr7:151060000-151062800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:151060000-151064400	Weak transcription	Fetal Intestine Small	intestine
40	chr7:151060000-151064600	Weak transcription	Left Ventricle	heart
41	chr7:151060000-151064600	Weak transcription	Hela-S3	cervix
42	chr7:151060000-151066600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:151060000-151067000	Weak transcription	Colonic Mucosa	Colon
44	chr7:151060000-151068000	Weak transcription	Lung	lung
45	chr7:151060000-151068600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:151060000-151068600	Weak transcription	Aorta	Aorta
47	chr7:151060000-151069400	Weak transcription	HepG2	liver
48	chr7:151060200-151062400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:151060200-151062400	Weak transcription	Fetal Stomach	stomach
50	chr7:151060200-151062400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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