Variant report

Variant	rs4053087
Chromosome Location	chr6:132020396-132020397
allele	-/TT/TTTTTTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886669	chr6:131991532-132059074	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1825552	chr6:132015084-132035688	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3373672	chr6:132018159-132031657	Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	esv3452154	chr6:132018359-132032757	Weak transcription Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
9	esv1805422	chr6:132018366-132035688	Weak transcription Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
10	esv1814843	chr6:132018366-132035688	Strong transcription Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
11	esv1832009	chr6:132018366-132035688	Weak transcription Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
12	esv1810897	chr6:132018366-132045096	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
13	esv20379	chr6:132018772-132036315	Weak transcription Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
14	nsv821228	chr6:132018772-132037435	Weak transcription Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
15	nsv981184	chr6:132019036-132020847	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
16	esv1815135	chr6:132019112-132028874	Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
17	esv1830433	chr6:132019112-132036809	Weak transcription Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
18	esv3377992	chr6:132019259-132022757	Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
19	esv14141	chr6:132019301-132029571	Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
20	esv1814034	chr6:132019548-132025959	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
21	esv1815149	chr6:132019548-132025959	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	esv1827887	chr6:132019548-132025959	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
23	esv1828674	chr6:132019548-132025959	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
24	esv1806257	chr6:132019548-132033617	Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
25	esv1818822	chr6:132019548-132033617	Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
26	esv1820239	chr6:132019548-132033617	Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
27	esv1825085	chr6:132019548-132033617	Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
28	esv1827326	chr6:132019548-132033617	Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
29	esv1820619	chr6:132019748-132035688	Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
30	esv1833513	chr6:132019748-132035688	Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
31	esv1817558	chr6:132019748-132039271	Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
32	esv3384854	chr6:132019759-132028857	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131993600-132020600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:131998600-132054000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:131998800-132043000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:131999400-132020600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:132002600-132054400	Weak transcription	K562	blood
6	chr6:132019000-132020800	Weak transcription	Fetal Intestine Large	intestine
7	chr6:132019400-132040200	Weak transcription	HepG2	liver
8	chr6:132019400-132041400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links