Variant report

Variant	rs4053399
Chromosome Location	chr5:74429732-74429733
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10957048	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10957050	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12679536	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs16923384	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4294168	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4737498	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4738675	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4738676	0.81[EUR][1000 genomes]
rs60787515	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6993550	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6997474	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6997952	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7819923	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7829302	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7844896	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9720257	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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