Variant report

Variant	rs4053811
Chromosome Location	chr6:85901798-85901799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1321748	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1535314	0.83[EUR][1000 genomes]
rs1958939	0.83[EUR][1000 genomes]
rs1981016	0.83[EUR][1000 genomes]
rs4053810	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs481531	0.83[EUR][1000 genomes]
rs519667	0.82[EUR][1000 genomes]
rs535422	0.83[EUR][1000 genomes]
rs571787	0.86[EUR][1000 genomes]
rs581803	0.86[EUR][1000 genomes]
rs593602	0.86[EUR][1000 genomes]
rs594124	0.86[EUR][1000 genomes]
rs608022	0.86[EUR][1000 genomes]
rs633322	0.86[CEU][hapmap]
rs637870	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs662760	0.86[CEU][hapmap]
rs7746109	0.83[EUR][1000 genomes]
rs9351055	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv970148	chr6:85901688-85904720	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85897600-85902600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:85900600-85903000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:85901000-85903000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:85901200-85902400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:85901200-85903000	Enhancers	Osteobl	bone
6	chr6:85901600-85902200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:85901600-85902200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:85901600-85902800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:85901600-85902800	Enhancers	NHDF-Ad	bronchial
10	chr6:85901600-85903200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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