Variant report

Variant	rs405937
Chromosome Location	chr6:5489344-5489345
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5469656..5471454-chr6:5488519..5490118,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12199688	1.00[ASN][1000 genomes]
rs12205522	1.00[ASN][1000 genomes]
rs364531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408705	0.82[AFR][1000 genomes]
rs430568	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019428	chr6:5216835-5627839	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538118	chr6:5216835-5627839	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883418	chr6:5307432-5501389	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1034607	chr6:5311590-5573514	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv538120	chr6:5311590-5573514	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1023027	chr6:5377308-5556749	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538121	chr6:5377308-5556749	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv600886	chr6:5426265-5511614	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1017506	chr6:5443538-5551125	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5449000-5499400	Weak transcription	Fetal Intestine Large	intestine
2	chr6:5461600-5507200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:5466400-5518200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:5466600-5506400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:5466800-5502200	Weak transcription	Gastric	stomach
6	chr6:5471800-5489400	Weak transcription	Small Intestine	intestine
7	chr6:5471800-5505800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:5472400-5511600	Weak transcription	Fetal Stomach	stomach
9	chr6:5472600-5491800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:5472600-5496800	Weak transcription	NHDF-Ad	bronchial
11	chr6:5472600-5499400	Weak transcription	Spleen	Spleen
12	chr6:5472600-5501800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:5472600-5506200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:5477800-5490000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:5480200-5489400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:5481400-5497600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:5481600-5489400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:5481600-5489600	Weak transcription	Ovary	ovary
19	chr6:5481600-5490400	Weak transcription	Brain Germinal Matrix	brain
20	chr6:5481600-5492200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:5481600-5493800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:5481600-5496000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:5481600-5496800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:5481600-5499400	Weak transcription	Right Ventricle	heart
25	chr6:5481600-5499600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:5481600-5500600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:5481800-5489400	Weak transcription	Fetal Lung	lung
28	chr6:5481800-5490400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:5482000-5499600	Weak transcription	Brain Anterior Caudate	brain
30	chr6:5482200-5498200	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:5482200-5506600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:5483400-5500600	Weak transcription	Pancreas	Pancrea
33	chr6:5485000-5500200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:5485200-5506400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:5485400-5489600	Weak transcription	Fetal Thymus	thymus
36	chr6:5485600-5490600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:5485600-5490800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:5485800-5496800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:5486000-5505400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:5486200-5498400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:5486200-5506800	Weak transcription	Thymus	Thymus
42	chr6:5486400-5502800	Weak transcription	HepG2	liver
43	chr6:5487000-5498600	Weak transcription	HMEC	breast
44	chr6:5487000-5499000	Weak transcription	NHEK	skin
45	chr6:5487000-5499400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:5487200-5494800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:5487200-5499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:5487600-5490800	Weak transcription	Lung	lung
49	chr6:5487800-5491600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:5487800-5493600	Weak transcription	Dnd41	blood

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