Variant report

Variant	rs4067539
Chromosome Location	chr3:141377952-141377953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3335270	chr3:141377810-141378085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv237537	chr3:141377950-141377980	Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141376200-141378200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:141377000-141378400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
3	chr3:141377600-141378000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:141377600-141379400	Active TSS	Aorta	Aorta
5	chr3:141377600-141379600	Active TSS	Colon Smooth Muscle	Colon
6	chr3:141377600-141379600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
7	chr3:141377600-141379800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr3:141377600-141379800	Active TSS	Rectal Smooth Muscle	rectum
9	chr3:141377800-141378000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr3:141377800-141378200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr3:141377800-141378200	Bivalent Enhancer	Fetal Lung	lung
12	chr3:141377800-141378200	Bivalent Enhancer	HepG2	liver
13	chr3:141377800-141378600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:141377800-141378800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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