Variant report

Variant	rs4072057
Chromosome Location	chr14:106164434-106164435
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7144319	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4072057	IGHJ6	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106158600-106166000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr14:106161600-106164600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:106163200-106166200	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:106163400-106166200	Enhancers	GM12878-XiMat	blood
5	chr14:106163600-106167200	Weak transcription	Placenta	Placenta
6	chr14:106164200-106164600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
7	chr14:106164200-106164800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:106164400-106164800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links