Variant report

Variant	rs4072199
Chromosome Location	chr14:104713333-104713334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104709839..104712329-chr14:104712351..104715124,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228032	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10135432	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10139025	0.82[EUR][1000 genomes]
rs10139344	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10143250	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10146425	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10149178	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10438245	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11622071	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11623015	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11625727	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11627964	0.82[EUR][1000 genomes]
rs11628076	0.88[ASN][1000 genomes]
rs12878721	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12897020	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13313386	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34422243	0.83[ASN][1000 genomes]
rs34443200	0.82[ASN][1000 genomes]
rs35490559	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3803285	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935521	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073859	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4265746	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4268695	0.83[ASN][1000 genomes]
rs4275789	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4304958	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4306437	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4335718	0.80[AFR][1000 genomes]
rs4347563	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4363790	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4374098	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4444263	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4486819	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4488388	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4503729	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4558342	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4906427	0.81[EUR][1000 genomes]
rs4998586	0.80[EUR][1000 genomes]
rs7143321	0.83[EUR][1000 genomes]
rs7148170	0.83[EUR][1000 genomes]
rs7148495	0.82[EUR][1000 genomes]
rs7152580	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7153888	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154399	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154429	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8021721	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021989	0.90[ASN][1000 genomes]
rs8022201	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022252	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8022258	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8022450	0.92[ASN][1000 genomes]
rs8022794	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8023213	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050479	chr14:104500427-104805738	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv902331	chr14:104523839-104849219	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1044920	chr14:104528663-104803058	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv902345	chr14:104554044-104865071	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	esv1826669	chr14:104554461-105065941	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv1047665	chr14:104577600-104787620	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1049810	chr14:104577600-105060539	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv1041696	chr14:104614589-104798502	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1048001	chr14:104632614-104895474	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456436	chr14:104657760-104769149	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv566032	chr14:104657760-104769149	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv566033	chr14:104666821-104747384	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv902356	chr14:104686346-104758887	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv902357	chr14:104691808-104817192	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv902358	chr14:104699495-104758887	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv902359	chr14:104699495-104769149	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv902360	chr14:104699495-104807712	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv902361	chr14:104699495-104872237	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
19	nsv902362	chr14:104699495-104917657	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
20	nsv832885	chr14:104710247-104875727	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4072199	C14orf144	cis	lung	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104710800-104716800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:104712800-104713400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr14:104712800-104713600	Enhancers	Hela-S3	cervix
4	chr14:104712800-104713800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
5	chr14:104712800-104714800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr14:104712800-104714800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr14:104713200-104719400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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