Variant report

Variant	rs4073382
Chromosome Location	chr5:178265992-178265993
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr5:178265901-178266202	K562	blood:	n/a	n/a
2	JUND	chr5:178265912-178266614	K562	blood:	n/a	n/a
3	NR2F2	chr5:178265879-178266668	MCF-7	breast:	n/a	n/a
4	HDAC2	chr5:178265989-178266734	MCF-7	breast:	n/a	n/a
5	GATA3	chr5:178265881-178266795	MCF-7	breast:	n/a	n/a
6	TCF12	chr5:178265980-178266934	MCF-7	breast:	n/a	n/a
7	GATA3	chr5:178265870-178266766	MCF-7	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:178157414..178158390-chr5:178265741..178266981,10	MCF-7	breast:
2	chr5:178214124..178214763-chr5:178265905..178266637,2	MCF-7	breast:
3	chr5:178264186..178266313-chr5:178270488..178273068,2	MCF-7	breast:
4	chr5:178050940..178053910-chr5:178263858..178266243,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253725	TF binding region
ENSG00000169131	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10059914	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10061541	0.85[CHB][hapmap];0.84[YRI][hapmap]
rs10903234	0.83[ASN][1000 genomes]
rs11249579	0.80[ASN][1000 genomes]
rs11249594	0.83[ASN][1000 genomes]
rs11249595	0.83[ASN][1000 genomes]
rs11249596	0.83[ASN][1000 genomes]
rs12515217	0.84[ASN][1000 genomes]
rs12515789	0.84[ASN][1000 genomes]
rs12653675	0.89[ASN][1000 genomes]
rs12659865	0.83[ASN][1000 genomes]
rs12659899	0.85[ASN][1000 genomes]
rs13168177	0.85[ASN][1000 genomes]
rs13171491	0.85[ASN][1000 genomes]
rs13176136	0.85[ASN][1000 genomes]
rs13185058	0.85[ASN][1000 genomes]
rs13185213	0.85[ASN][1000 genomes]
rs13185345	0.85[ASN][1000 genomes]
rs13186348	0.85[ASN][1000 genomes]
rs28516575	0.87[ASN][1000 genomes]
rs28666448	0.87[ASN][1000 genomes]
rs35000987	0.84[ASN][1000 genomes]
rs35120582	0.82[ASN][1000 genomes]
rs35572924	0.84[ASN][1000 genomes]
rs4073864	0.87[ASN][1000 genomes]
rs4701141	0.83[ASN][1000 genomes]
rs4701142	0.86[ASN][1000 genomes]
rs6600965	0.84[ASN][1000 genomes]
rs6600966	0.85[ASN][1000 genomes]
rs6600968	0.85[ASN][1000 genomes]
rs6600969	0.85[ASN][1000 genomes]
rs6600970	0.82[ASN][1000 genomes]
rs6600971	0.85[ASN][1000 genomes]
rs6600972	0.85[ASN][1000 genomes]
rs6600973	0.82[ASN][1000 genomes]
rs6600974	0.86[ASN][1000 genomes]
rs6600975	0.86[ASN][1000 genomes]
rs6600976	0.86[ASN][1000 genomes]
rs6600977	0.86[ASN][1000 genomes]
rs6600978	0.85[ASN][1000 genomes]
rs6600979	0.87[ASN][1000 genomes]
rs6861417	0.81[ASN][1000 genomes]
rs6867380	0.85[ASN][1000 genomes]
rs6869597	0.85[ASN][1000 genomes]
rs6871640	0.85[ASN][1000 genomes]
rs6874069	0.85[ASN][1000 genomes]
rs6877165	0.84[CHB][hapmap];0.92[YRI][hapmap]
rs6879858	0.91[ASN][1000 genomes]
rs6880309	0.85[ASN][1000 genomes]
rs6884341	0.80[ASN][1000 genomes]
rs6885551	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6889638	0.85[ASN][1000 genomes]
rs6892280	0.80[ASN][1000 genomes]
rs6897032	0.85[ASN][1000 genomes]
rs7447735	0.83[ASN][1000 genomes]
rs7701596	0.84[ASN][1000 genomes]
rs7703952	0.84[ASN][1000 genomes]
rs7716645	0.85[ASN][1000 genomes]
rs7716807	0.85[ASN][1000 genomes]
rs7718276	0.84[ASN][1000 genomes]
rs7720135	0.83[ASN][1000 genomes]
rs7720550	0.85[ASN][1000 genomes]
rs7722370	0.84[ASN][1000 genomes]
rs7735410	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv968861	chr5:178251700-178275142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv18838	chr5:178258606-178266167	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178263600-178286400	Weak transcription	Right Atrium	heart
2	chr5:178265200-178266400	Enhancers	Placenta	Placenta

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