Variant report

Variant	rs4073844
Chromosome Location	chr14:38677535-38677536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2250334	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2250885	0.82[CHD][hapmap]
rs2812099	0.80[AMR][1000 genomes]
rs4394988	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv533235	chr14:38558180-39117391	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832773	chr14:38612778-38785003	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38676400-38677600	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr14:38676600-38677600	Active TSS	Rectal Smooth Muscle	rectum
3	chr14:38676600-38677800	Active TSS	Colonic Mucosa	Colon
4	chr14:38676600-38678000	Flanking Active TSS	Liver	Liver
5	chr14:38676600-38678200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:38676600-38678200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr14:38676600-38678800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
8	chr14:38676600-38679200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr14:38676600-38679400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr14:38676600-38680800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:38676600-38681600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr14:38676800-38677600	Active TSS	Brain Anterior Caudate	brain
13	chr14:38676800-38677800	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr14:38676800-38678200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr14:38676800-38678200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr14:38676800-38678800	Active TSS	Hela-S3	cervix
17	chr14:38676800-38681000	Flanking Active TSS	HUVEC	blood vessel
18	chr14:38677000-38677600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr14:38677000-38677600	Active TSS	Brain Hippocampus Middle	brain
20	chr14:38677000-38677600	Bivalent Enhancer	Fetal Brain Male	brain
21	chr14:38677000-38677600	Active TSS	Psoas Muscle	Psoas
22	chr14:38677000-38677600	Bivalent/Poised TSS	HSMMtube	muscle
23	chr14:38677000-38677800	Bivalent/Poised TSS	Right Ventricle	heart
24	chr14:38677000-38678000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
25	chr14:38677000-38678400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
26	chr14:38677000-38678800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:38677000-38678800	Active TSS	Brain Angular Gyrus	brain
28	chr14:38677000-38678800	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr14:38677000-38678800	Active TSS	NHDF-Ad	bronchial
30	chr14:38677000-38679000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr14:38677000-38679000	Active TSS	Gastric	stomach
32	chr14:38677000-38679000	Active TSS	Stomach Mucosa	stomach
33	chr14:38677000-38679200	Active TSS	Right Atrium	heart
34	chr14:38677000-38679400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
35	chr14:38677000-38680200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
36	chr14:38677000-38680200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
37	chr14:38677000-38680400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
38	chr14:38677000-38680800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
39	chr14:38677200-38677600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
40	chr14:38677200-38677600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
41	chr14:38677200-38677600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:38677200-38677600	Active TSS	Esophagus	oesophagus
43	chr14:38677200-38677800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr14:38677200-38677800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
45	chr14:38677200-38677800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr14:38677200-38677800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
47	chr14:38677200-38677800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
48	chr14:38677200-38677800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:38677200-38677800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
50	chr14:38677200-38678000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links