Variant report

Variant	rs4075305
Chromosome Location	chr2:233929907-233929908
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233923368..233925539-chr2:233928371..233930307,2	K562	blood:

Variant related genes	Relation type
ENSG00000168918	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11900969	1.00[EUR][1000 genomes]
rs55827216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7601830	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv876012	chr2:233899377-233996429	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233925200-233930000	Enhancers	Stomach Mucosa	stomach
2	chr2:233925400-233930000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr2:233926600-233930000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:233926800-233931000	Weak transcription	Pancreas	Pancrea
5	chr2:233926800-233931800	Weak transcription	K562	blood
6	chr2:233927400-233930000	Enhancers	Adipose Nuclei	Adipose
7	chr2:233927400-233930000	Enhancers	Right Atrium	heart
8	chr2:233927400-233930000	Genic enhancers	Spleen	Spleen
9	chr2:233928000-233931600	Weak transcription	HUVEC	blood vessel
10	chr2:233928200-233930000	Enhancers	Colonic Mucosa	Colon
11	chr2:233928200-233933400	Weak transcription	Right Ventricle	heart
12	chr2:233928400-233931600	Weak transcription	Small Intestine	intestine
13	chr2:233928800-233930000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr2:233928800-233931600	Weak transcription	Brain Hippocampus Middle	brain
15	chr2:233928800-233932000	Weak transcription	Fetal Stomach	stomach
16	chr2:233928800-233932800	Weak transcription	Fetal Intestine Small	intestine
17	chr2:233928800-233933800	Genic enhancers	Primary B cells from cord blood	blood
18	chr2:233928800-233934200	Genic enhancers	Primary B cells from peripheral blood	blood
19	chr2:233929000-233930000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr2:233929000-233930000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:233929000-233930000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr2:233929000-233930000	Weak transcription	Psoas Muscle	Psoas
23	chr2:233929000-233930200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr2:233929000-233930800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr2:233929000-233932600	Weak transcription	Esophagus	oesophagus
26	chr2:233929000-233936000	Genic enhancers	Primary T cells fromperipheralblood	blood
27	chr2:233929000-233939800	Weak transcription	Left Ventricle	heart
28	chr2:233929000-233940200	Weak transcription	Gastric	stomach
29	chr2:233929200-233930000	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:233929200-233930000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr2:233929200-233930000	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr2:233929200-233931200	Genic enhancers	HepG2	liver
33	chr2:233929200-233933600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:233929200-233933600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr2:233929200-233940000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr2:233929400-233930000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr2:233929400-233930000	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr2:233929400-233930200	Enhancers	Duodenum Mucosa	Duodenum
39	chr2:233929400-233931000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr2:233929400-233931800	Weak transcription	Dnd41	blood
41	chr2:233929400-233932000	Strong transcription	Thymus	Thymus
42	chr2:233929400-233933200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr2:233929400-233933600	Weak transcription	Lung	lung
44	chr2:233929600-233930200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr2:233929600-233933800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
46	chr2:233929800-233930000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr2:233929800-233930000	Active TSS	GM12878-XiMat	blood
48	chr2:233929800-233930000	Enhancers	NHDF-Ad	bronchial
49	chr2:233929800-233930200	Enhancers	Primary hematopoietic stem cells	blood
50	chr2:233929800-233930200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links