Variant report

Variant	rs4077592
Chromosome Location	chr7:70943792-70943793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10229218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10231160	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10249266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10261379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10263612	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10264348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10269550	0.92[ASN][1000 genomes]
rs11535131	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11561753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12536772	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17329	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs28737355	0.91[ASN][1000 genomes]
rs36109349	0.96[ASN][1000 genomes]
rs4075533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4075535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4236252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4403306	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4476891	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4521648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4535614	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4577851	0.92[ASN][1000 genomes]
rs55810201	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55998816	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57078692	0.96[ASN][1000 genomes]
rs57551096	0.92[ASN][1000 genomes]
rs57914683	0.98[ASN][1000 genomes]
rs58454573	0.92[ASN][1000 genomes]
rs58520021	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58840129	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59209078	0.98[ASN][1000 genomes]
rs59497117	0.94[ASN][1000 genomes]
rs59524554	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59724842	0.98[ASN][1000 genomes]
rs60191232	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60955657	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61080489	0.94[ASN][1000 genomes]
rs6947338	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6965355	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6977404	0.99[ASN][1000 genomes]
rs73365669	0.94[ASN][1000 genomes]
rs73365694	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7786783	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7787297	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7805130	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806529	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70938200-70944000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:70940200-70944800	Weak transcription	Fetal Lung	lung
3	chr7:70940200-70945400	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:70940200-70951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:70940600-70944400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70940600-70946000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:70941400-70944200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:70941400-70945600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:70941400-70953200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:70942400-70943800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:70943000-70944000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:70943200-70944600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:70943600-70944200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:70943600-70944400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:70943600-70944800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links