Variant report

Variant	rs407798
Chromosome Location	chr2:7151995-7151996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7145702..7149842-chr2:7151104..7154625,5	K562	blood:
2	chr2:7145702..7147374-chr2:7150946..7152604,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2444299	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2460401	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309309	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs309316	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs309318	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs309320	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs309324	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs364891	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs388038	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs391109	0.81[ASN][1000 genomes]
rs397865	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs407427	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs436955	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs441766	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs443363	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs454213	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs771273	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7101200-7154000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:7124000-7157600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:7127200-7154000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:7131600-7154200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr2:7131600-7154200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:7137400-7160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:7142600-7163000	Weak transcription	Small Intestine	intestine
10	chr2:7144200-7154600	Weak transcription	HepG2	liver
11	chr2:7145200-7156200	Enhancers	Brain Angular Gyrus	brain
12	chr2:7146400-7153000	Enhancers	Right Ventricle	heart
13	chr2:7146600-7152800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:7146800-7156000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:7147000-7154800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:7147200-7158600	Enhancers	Colon Smooth Muscle	Colon
17	chr2:7147400-7152200	Enhancers	NH-A	brain
18	chr2:7147400-7154000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:7147400-7156000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:7147400-7157000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr2:7147400-7159200	Weak transcription	Thymus	Thymus
22	chr2:7147600-7155600	Enhancers	NHDF-Ad	bronchial
23	chr2:7148000-7153800	Weak transcription	Fetal Kidney	kidney
24	chr2:7148000-7154000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr2:7148000-7155800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:7148200-7152000	Enhancers	Fetal Stomach	stomach
27	chr2:7148200-7152600	Strong transcription	Dnd41	blood
28	chr2:7148200-7154000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr2:7148200-7154000	Weak transcription	Fetal Brain Male	brain
30	chr2:7148200-7156000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr2:7148200-7159400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr2:7148600-7154400	Weak transcription	Primary B cells from cord blood	blood
34	chr2:7148800-7152800	Enhancers	Adipose Nuclei	Adipose
35	chr2:7148800-7154000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr2:7148800-7154200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr2:7148800-7154200	Weak transcription	GM12878-XiMat	blood
38	chr2:7148800-7154600	Weak transcription	Fetal Brain Female	brain
39	chr2:7148800-7155400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr2:7148800-7156400	Enhancers	Brain Hippocampus Middle	brain
41	chr2:7148800-7158000	Weak transcription	Brain Germinal Matrix	brain
42	chr2:7148800-7159200	Enhancers	Brain Substantia Nigra	brain
43	chr2:7148800-7160200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:7148800-7160800	Enhancers	Fetal Heart	heart
45	chr2:7148800-7171400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr2:7149000-7157800	Enhancers	Brain Anterior Caudate	brain
47	chr2:7149200-7152000	Enhancers	Stomach Smooth Muscle	stomach
48	chr2:7149200-7154000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr2:7149200-7154400	Weak transcription	K562	blood
50	chr2:7149200-7154600	Weak transcription	Primary monocytes fromperipheralblood	blood

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