Variant report

Variant	rs4082156
Chromosome Location	chr3:47166366-47166367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47160775..47162844-chr3:47166336..47168539,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12486248	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12487863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490244	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490251	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12491419	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12492463	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12493723	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495173	0.89[ASN][1000 genomes]
rs12495438	0.94[ASN][1000 genomes]
rs17079512	0.92[ASN][1000 genomes]
rs2291721	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3933020	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4627772	0.92[ASN][1000 genomes]
rs4683318	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683321	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683323	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58206566	0.94[ASN][1000 genomes]
rs59601660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60285825	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61364027	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7372834	0.84[AMR][1000 genomes]
rs7638049	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3461834	chr3:46977730-47173228	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3461835	chr3:46977822-47173168	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3461836	chr3:46977822-47173168	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
5	nsv1007714	chr3:47084387-47331570	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv1002970	chr3:47120592-47170607	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv590210	chr3:47126543-47214122	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47126800-47168200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr3:47140000-47175600	Weak transcription	Small Intestine	intestine
3	chr3:47144200-47170800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:47145800-47175000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:47150800-47166600	Strong transcription	Fetal Muscle Trunk	muscle
6	chr3:47151200-47167400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:47155200-47172600	Weak transcription	Colonic Mucosa	Colon
8	chr3:47155400-47183800	Weak transcription	Esophagus	oesophagus
9	chr3:47160600-47167800	Strong transcription	Fetal Thymus	thymus
10	chr3:47160800-47167400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr3:47161000-47166400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:47161000-47167400	Strong transcription	Liver	Liver
13	chr3:47161000-47167800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:47161000-47168200	Strong transcription	Dnd41	blood
15	chr3:47161200-47167800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:47161600-47166400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:47161600-47168600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:47161800-47166600	Strong transcription	Fetal Brain Female	brain
19	chr3:47161800-47167200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr3:47162000-47166600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:47162000-47166600	Strong transcription	Thymus	Thymus
22	chr3:47162400-47166400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:47162400-47167200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:47162400-47167400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr3:47162400-47167600	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr3:47162600-47167200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:47162600-47170000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:47163000-47167400	Strong transcription	Primary B cells from cord blood	blood
29	chr3:47163000-47168000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:47163000-47169800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:47164000-47167800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:47164000-47176000	Weak transcription	Right Atrium	heart
33	chr3:47164200-47166400	Strong transcription	GM12878-XiMat	blood
34	chr3:47164200-47168000	Weak transcription	Stomach Mucosa	stomach
35	chr3:47164400-47167200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:47164600-47166600	Strong transcription	NHLF	lung
37	chr3:47164600-47167800	Strong transcription	Fetal Intestine Small	intestine
38	chr3:47164800-47167800	Strong transcription	Fetal Stomach	stomach
39	chr3:47165000-47172000	Weak transcription	Fetal Heart	heart
40	chr3:47165600-47175000	Weak transcription	Psoas Muscle	Psoas
41	chr3:47165800-47167400	Weak transcription	HSMMtube	muscle
42	chr3:47165800-47168000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr3:47165800-47169400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr3:47165800-47169600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:47165800-47169600	Weak transcription	Gastric	stomach
46	chr3:47165800-47169600	Weak transcription	Pancreas	Pancrea
47	chr3:47165800-47170400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr3:47165800-47171400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr3:47165800-47171800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:47165800-47175000	Weak transcription	Left Ventricle	heart

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