Variant report

Variant	rs4082504
Chromosome Location	chr4:106448900-106448901
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10856977	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11721358	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11722247	0.84[ASN][1000 genomes]
rs11730243	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12499086	0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13128048	0.87[ASN][1000 genomes]
rs1989934	0.87[ASN][1000 genomes]
rs35657725	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7655479	0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7666588	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687068	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7687093	0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv521423	chr4:106442518-106448900	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3385865	chr4:106448253-106450351	Weak transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4082504	PPA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106448600-106466200	Weak transcription	Pancreas	Pancrea
2	chr4:106448800-106458000	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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